Scaffold Ga0335074_10001166

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10001166
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35760
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F066643	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000116633	F016649	GGAG	MWQRAILLLFFAVLSMVGCNSVPDISGVWKGTIQASAAGGKGNWQGSTELTLNQSGNSLTGTFVFTQPQAGRVQVPITSGIVSKNAVTFSGQSEFPLGGSMEVTFHGTVSGTSLTGTTDMTSRGLFGTVTNTGPLTLTKQ
Ga0335074_1000116638	F066643	AGGAG	MLKENNCCCVVCQVERNLLNSLSTQIAQTQFQALALSHPILNHFDSPADVIAQLHEHERVEAVNHKTWNGILHALVDSIADRTAEEIGQQLLLAAYAPAIHKVYREVCQKFPVLCPEDVAQQAALCFLETARSPEMQTLNGHLPAALSRRFRQSLFRWAIGELRQSLPLEQIAANVPETQARNFEEAVILEQLLSKARRMGVLSASECELVRKFHCDGFHRNELGSGEGGPSARALYFRVYRAINRLRRLGRGEQPVRGTQAALNNTNSKNSSLDAQTFSGEMCIRNSEKGISPEQSHRGPQLESDVPPIAA
Ga0335074_1000116639	F013999	AGGAGG	MLRYARRKRRIGLRRFARAIGTSVVTLLLASPAFAQIGGDQVTTFFSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG