NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10001000

Scaffold Ga0335074_10001000


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10001000 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38371
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016649Metagenome / Metatranscriptome245Y
F017625Metagenome / Metatranscriptome239Y
F085449Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1000100013F016649GGGGGMRDRPLSLFLMILSFAIFSLSGCVVHSDVSGVWKGTIQASGAGGKDKWQGPVELTLNQSGDVLTGTLVFTHPQGGRVQIPITSGIVSKDAVTFSGQNQFPMGSIEISFHGTVARTSLTGTADMTSRSVLIGPQASTASLNLTKQ
Ga0335074_1000100014F085449GGAMASGAAPSSFRLNSVDRQGRQIDPAVHAAAETVFPRALEYGTNLLGDTAVVANTLEEVAATVSQLIARRDPPGEPAPIRNLPGYVFRAFVREVKRLKNKELATLDAAIAGQTLAQRLADPSRQLEMEVLVAECLALFDFVERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKEKLALSRKPLPSAGETAQNEGPKPAMGADDDKRKT
Ga0335074_1000100015F017625GGAGMRGRNQQWGPMTTKEKPEFNDEFNEAEFLGFAKSYLSEAFPNPQRIGCPPDSDLQRMADQPVEARDAVVSKHLTCCSPCFNRYMEILASLKRRRAAGQ
Ga0335074_1000100020F017625AGGAGMTGKDRPEFNDEFNEAEFFGFAKSYLSEVFPNPQRIGCPPNCDLQRMAEHPVEARDAKVSEHLTCCSPCFNDYMEILAVLRRRIG
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