Scaffold Ga0335074

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10000827 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032895 Open in IMG/M

Scaffold ID

Ga0335074_10000827 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42449
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (82.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

42449

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (82.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5059

Long. (^o)

-80.2517

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F003810	Metagenome / Metatranscriptome	467	Y
F004287	Metagenome / Metatranscriptome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000082712	F001450	GGA	VILVTRETHEPPTSLSERLIQAGGTNRLGEANFRVVWGGSRLAWVGGRWVDRDAHGNVIGGRIELRRVPKYFPLDRWHIERWMPPESYGSPEEWYARTTETENGIRLPALGPYPSRGEYEHCFTLSGANKEFIPLTTAACDWVVRAIEWARRQPMAAMRGAIASREARREQEWSDRVDDLMGAEKKDEGRS
Ga0335074_1000082713	F004287	AGGA	VKGSHLQTTRDTMRTTLSSHERRDLLVETQTKGDAVATASIASVSDQDWYISRTHGVYHIPACSKDQSYALVLITSRGDAIDLGDNRRFPFTISARDIAGDLLQDLHDHGIFVCAGARPTDDELSSARERRNRYYQGLIAEGDMMWARGHSFREISDLHRRAAISLGIEREWAYVPMRTMDCPVCGEKIKANVAVCKHCHGILDYEKAALHGLHQGSTAERRPVIWTGAPDKPEKTREMNTNPGTLRDQNQGSEEARRET
Ga0335074_1000082715	F003810	AGGTGG	MLSIHYSANAHLWALFVAGHGLHVLKRASLSTASRISGTRSRREWLKVNALTLLIRFFVNAATFSYWIAHPNVGTHILGAVGIPVNLTLEPGYATAALFGLSGDSLVDWATAKVPFLQKEIPAAPPSEA
Ga0335074_1000082722	F002623	GAGG	VFVRQYTPDDLAALERMHGRQGFEYGFPDVSDPIFVSKLVVEEPSGNIVMGSLARLTCEIYLLMDPDSGGPEDRYKRIVALHESAERDLGRRGLDDAHAWLPPSIARRFGKRLEKFGWVRDDKWTPYCYRINQSKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335074_10000827

Overview

Ecosystem & Geography

Associated Families

Sequences