Scaffold Ga0335074

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10000742 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032895 Open in IMG/M

Scaffold ID

Ga0335074_10000742 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45191
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (73.81%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

45191

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (73.81%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5059

Long. (^o)

-80.2517

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F028365	Metagenome	192	Y
F054509	Metagenome	139	N
F072976	Metagenome	120	Y
F079487	Metagenome	115	Y
F100107	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000074232	F072976	GAG	VSAVSAPPPSPAQVTLSAHAVEQYRDRVKPGLDPDGARAELEQLCALGLITTQAPGWVNAARPAAYYLLLGDQIVLPLAPQAHAWVATTCVAQRTLTRARRAAESARRASIAARKRALRGTRH
Ga0335074_1000074234	F054509	GGA	VSEPLISTQTANEQLRRADERWAAAVRGLRPYGERLLELADAAEHESRALLLSDLANVKWNPRPGARNVRLAYEVEEDSGRPGPRELWAKFDRAVKQLGVALEGESIRAIADAFSQLSAHTRQIADAIALPAAAEEDPSTGRRAG
Ga0335074_1000074237	F079487	AGGA	VNKPDKPKPSGRRIALRPLRGAGRHFRSNLVAYLALVVAVTSGGSYALAATASNGTIGVCVDKGTSVMHLAKHPRCGRGQTRIGLSSALDRPTVSAWAASNEAGDIVGGAGLSISHVGVGVYNITLTAASCREAANNAPVVSASDTEPPGGQATTTFPVAWTRPTSTGIEAFTVYTGVVVSGAFQPKDESFDFTDSCT
Ga0335074_100007424	F100107	GGCGG	MSRAAEAMIAAKAKRNEHKRESVLEVIRQMVEEMDPALSNYSEIARRAGVHRNYVAGRFAAEIELAQMEVNRRYATGTAYRHSMSVASLRAERTMFREQAQAQAKELARLRKRLGIELGREVAVEHLGLDQTPELVALRDANERLSARVTDLEIQLRDAQEDLEAARRTNTQLLRELNGARPNDPSRNRTS
Ga0335074_100007428	F028365	N/A	LITPDAIYRQLARPWPADELAERYQAAYERGARDLPADEDPPECPITLLATAIPRLISLAVAANVLHLLPTTTHDGAAIAQELIATIDATATGSLHRTHLALQADGESRGYDADEWLPLVYEQAADWLQHASAAADPPPAIEHAQQAGRFAALAIGALDRDAPTVPEAITDCLAHLLFTCVFADAATRSRRGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335074_10000742

Overview

Ecosystem & Geography

Associated Families

Sequences