Scaffold Ga0335074_10000280

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10000280
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77733
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (88.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006399	Metagenome / Metatranscriptome	374	Y
F006672	Metagenome / Metatranscriptome	367	Y
F014420	Metagenome / Metatranscriptome	263	Y
F020070	Metagenome	226	Y
F029198	Metagenome	189	Y
F033229	Metagenome / Metatranscriptome	178	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000028012	F006672	AGGAG	MKSFETLPGESNARIISSIINLVCPQCGGRMEEFQCEGRCRRSWLAEWEWANQATRSSTSRVCGSRARSLR
Ga0335074_1000028024	F014420	AGGAGG	MVESAEALRNWRELYNAALFEADTCKIPSRIEEARRALAFRSRELFETSPNYDGETEAIETALYALQALENCLRSNTKDRRRAARAG
Ga0335074_1000028038	F001596	AGAAG	MSWFHASTPAADDAREHASAAEIVACFRNERNLLHRLSFLITGDQTTAETAVAQACELTLQRNSPFREWLFEWAKVATISAAIPLEGDAIRRCEATYKDRSCQHVEHACQFDDEQRADSLALILQMDAEKIIAELDPLCRAILVLRIAIRSSIQDCSLRLNVSRAAVLAANCLAMTWLDCRQLQPPEEDHKVSQPLQEQERRNQLTDLGPRLLCLNRI
Ga0335074_1000028040	F006399	AGG	MAASALNSRVQSLVTEYGVFWQFWPQFEQIKSERRLVGFEVELIGSHKSDGDHVDPRCPSCRRVRAVLLAIADLLPRDSRLSGNSCTYNIDSHSNSILCLPALGNRSAVSVSIQFSWSRSNGQSFETDLLNEIKTFLNRWGLHQR
Ga0335074_1000028043	F029198	GAGG	METESDSRAVRVNGEVIVLHCWACGTAHCVNLELCLPGELAHMVCSNSNCRMSMFLMNELVVDDKTSRQMTRELNARATYSRFWK
Ga0335074_1000028046	F033229	AGGGGG	MYSTKSLDGVPTIQRDGRSVLGVWDQNWDFANEICDLLNSLDDDPHIFLTEHDRKWLKAMDRAFTKVQHA
Ga0335074_1000028048	F105952	GGAGG	VSTRREAPNTRRIDSTETSAGQVSRERRGSTVTVLAIEQAFAELGIHASLSDIVTKAQSIESGSIKSRSRRKRERTC
Ga0335074_1000028065	F020070	GAG	MSTTASMRPASVAFYLGSVLVLTIGAFCCFGLRLSAQTSGFQTNQRQSTTDLKSDDLLPSRIPVRIVESYSENGDRTLDKRSVEIRGADGGFEPYQDIEKETLKADASTVRTATRTFARDVNGRKSLVQVTEEEKHILSGGDSNVVRVTYNPDVNGRIQPVQREIVSTKKVGDDLEETDTTVMLTNINGGLAPAFKTHETRKRATNDTVETEETTWLPDVNGEWQVSEIRNDVTTQDAQGRKIEESISQPDADGKLSQISRTVSQESESTSEEKYKRLEAYSIDVPGTTRDGRLHLVQRKISHERSISISERATEEKVEQINPGDPNAGLRVSVVADGAMVSGPSGEQCTLTIRVRDPNGSFGIVSVDTTKSDRIPTIQIQQTPSEQPK