Scaffold Ga0335074_10000268

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10000268
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78915
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (86.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034793	Metagenome	173	Y
F043193	Metagenome	156	Y
F057048	Metagenome	136	Y
F080785	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_1000026818	F034793	AGGAG	VIEETSTTTGGSHAVAGESASPARKDRGSVVRTARAIVRLALAHRRLDHVPTLGQVKAMAWFDGREPCSYLLDRTVNFVPDPMEFGYERELGQHALSFTSRDPYGRVMELVTMRDGGGFDLLSGF
Ga0335074_1000026844	F057048	GGAG	MRNRGTDPLGYRDAAGARHRVLVRQSPAGAWQVLDITVVETLRGDGEGREVAEAIARDYVEQHDHPAARAGCRAAEQPAAA
Ga0335074_1000026846	F043193	GGAG	MLTLTPDPAVPQPVRALGIANTRRSAAAVLKTRLRRQEITLREILEHPPAELERQMTWEVLLWAPGIGRTRLRALNVHAIREGHVNLAAPLGALTERQRNWLAGRLWR
Ga0335074_1000026858	F080785	GGAG	MPTPFAERYRAATRQAGGACPIESGVLGRLADNECDHGRLPGDCTPKCGCWSPENAPVIALGQRVQPQPPPARRKAA