Scaffold Ga0335074

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10000025 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032895 Open in IMG/M

Scaffold ID

Ga0335074_10000025 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	301978
Total Scaffold Genes	265 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	181 (68.30%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

301978

Total Scaffold Genes

265 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

181 (68.30%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5059

Long. (^o)

-80.2517

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000228	Metagenome / Metatranscriptome	1519	Y
F000838	Metagenome / Metatranscriptome	866	Y
F001102	Metagenome / Metatranscriptome	777	Y
F001511	Metagenome / Metatranscriptome	680	Y
F001520	Metagenome / Metatranscriptome	679	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_10000025120	F001511	GGA	MFEDADGLEVFVNPERVIWIREYSKQMTEISCGHEDKFTVRLAPAHAVAALGRPAR
Ga0335074_10000025127	F001520	GGAGG	MNAIKFLFAAYIATWVIHGVYVGTLVRRFGRLRRELKELGKGK
Ga0335074_10000025180	F000036	N/A	MWYGPLAIFKLANSLDCNVLLVTLEGLQIALWRHDLRAGSTAATSRLRNPRAKPAMAYKEIFWMACDSTEQLRAEYGPFHTRDEAESEAKKLGFGYLLRYEHILDENEEIKEVRCIFVELPGAVPVGREAARITLHTRCATCGESAAHEKGWQAEVWADIHEFEHSRHHVRLFEHARGKGLKEICGWRG
Ga0335074_10000025197	F000228	N/A	MFLIPCSCGTTFAVAENYDQRGTAWSRYMACPGCGKRHDPKNRLLQMGFQREGYWKVDAC
Ga0335074_1000002543	F000838	AGGCGG	MRSMAGRAVRIISRVVFFLCASVSFVTAAPYVMLRGADLPVQSEWILFVIALALVGALNLAAALLPRSWIARLRRRDRDRDRDNDRLFSSPLKLLGGFAAIFYLVAVLAYFAPHRWNLDPQLMLALCPMYFVKMTIDPSSVAVFFVLAPMNAAVYGALGSALGYALLTFRGRR
Ga0335074_1000002565	F001102	AGGAG	MVPGVKKQIDVARLTADVAAAKVELLSAQCAADRIRLQYSPQEVAAHGDRESLKRALASAEALYRFFSQIEAHFKNEEGAGNRPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335074_10000025

Overview

Ecosystem & Geography

Associated Families

Sequences