Scaffold Ga0335074_10000009

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10000009
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 557674
• Total Scaffold Genes: 503
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 316 (62.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F000812	Metagenome / Metatranscriptome	881	Y
F000870	Metagenome / Metatranscriptome	851	Y
F002320	Metagenome / Metatranscriptome	571	Y
F002672	Metagenome / Metatranscriptome	538	Y
F005270	Metagenome / Metatranscriptome	406	Y
F008506	Metagenome / Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_10000009163	F000378	GGAGG	MEDRAPVVPSVEQSSASNPSIKHHEGRGAWVLTAYGICGLALFGVLAYFFSDFIAH
Ga0335074_10000009180	F002320	GAGG	MPRSVKIAPEIDAKLYEELVSVAKENGQSQRFVLERALEHYLHNVVPSQRMVRPEVMAAYRRSNEKYRELYKKLAQAKAK
Ga0335074_10000009286	F000136	GAGG	MAKSGLRVLYGEGDTEILKQQAAAMEKAGHSVEQAEGRKAVEAALKKGAFDLVVLGATLTRNDRHHLPYMVKKASFETSVLVMHADGSRHPYVDTCTDTGASLETVLTRIEGMKIAGMMPRAAAAAAGR
Ga0335074_10000009297	F000870	GGAGG	MNQFGNTQSGKPQSAAPDKSSRELVWTVDPSFQGWTCSQCEWNSPLPTLLNDPEAKTAFDRLAAAKFRDHKCADHLLRLASSHSDSFTARIRKMITHGFKPKDAVELFLQEAALEFRNQPKVLAQAQTEAEDFLRRLKAGLI
Ga0335074_10000009299	F008506	GGCGG	MLDHAVLAAVAEGMMSAASDVVVNGAALRVMRTGARRFRTVRFEMGGKGYQAIEQNPEKPSRWGQLAREGRRVVQFREVGSGKYVAVVVDGKVTEYG
Ga0335074_1000000945	F000812	GGA	LPDAPSNPTPAPTSRRWTIFAAGFLLLALALVVIYTSRAAFVSPPALVVVAAIGLAALLLQLRLRRDLTGRVRVPLWLTVVGLIFAVAAIFADVLRLTANLMQATALGAVVCFAISGIVVLHSLRKKGT
Ga0335074_10000009473	F002672	GAG	MEQIQARFVGVELYFENLEKARNFYLETLGLNLSDEQAGHHAKFTSGAGFVCLERKGVESYPSKDKAVLFFEVPNLRAALAAIGHDRIVQSESAWAVLHDPEGHNILLLQRPK
Ga0335074_10000009486	F005270	GGAGG	MEGSLDLPAGAGGEDVAAVVAALEPDQLTSAKELHHCPRRRLSATEKFLFWFLRIYLVFMFGVVLYQIWTAAR