Scaffold Ga0335074_10000007

Overview

Basic Information

• Taxon OID: 3300032895
• Scaffold ID: Ga0335074_10000007
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 576715
• Total Scaffold Genes: 488
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 330 (67.62%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5059
  • Long. (^o): -80.2517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000157	Metagenome / Metatranscriptome	1872	Y
F000299	Metagenome / Metatranscriptome	1341	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F001329	Metagenome / Metatranscriptome	721	Y
F001485	Metagenome / Metatranscriptome	686	Y
F001632	Metagenome / Metatranscriptome	660	Y
F022484	Metagenome / Metatranscriptome	214	Y
F042507	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_10000007131	F000299	GGGGG	MENGQKANGSRPVDRYDVGHVQEVIRQAHEELRQLLQQRAEVMKRIGTVKQTIAGLANLFGDGVLNEELLELVDRKSNGRQPGFTKACRMILMEAGHALSAREICDYFQQKMPAMLARHKDPMASVTTVLNRLVEYGEAQAVLSNSGRRAWLWVAESQTLTSTSNPAAHLAHAG
Ga0335074_10000007181	F000414	AGGAG	MSAPSRRPEIRRRRTRKEKILHLRKRLAAAKTDADRTHITAKLNKLAIGSPGQPLLK
Ga0335074_10000007186	F001632	AGGAG	MRPNSWKFAVASVFLVFSLHAFAADVNDQLAYCSYLMEQAQAQRDLLRTPIAAAGLTQPETGLPAQVVLGASLGLSDLRKAGLTVEAARRNCELYKATTGAQQNIQYAVASLEKEALNNRLTLIDQASQSIDQLMEKTAKMVEARNATRLMLFTLQTTKIKLDADRADTQAKIAALYVPPLREKSLKDLVAEKQNGEVSEQQALDKLNRQNNWDVALSVGVHQQVNPVAYGAQPYGAVSINYNLASREINRHLDRAVESYGEWKKVQEGDVIRNMEVLRQQLVESVSVQETRLKSLQEESREIDKNIQLIGNPDTSAALDFHNQLTAAQLLLQIETGDAAFRVERLHAYIARNF
Ga0335074_10000007234	F000138	N/A	MHMQLVNSFRIPFSTLISYIPVIATIVTTFFSIILARATLRYVESTDKGLALAREEFEREWTPDLHVKIERISPTEARVVVTNLAKTSVLLQLLQLRKLTHAMPFERCRLNDPLVGGTTWTAEMGRRILACTGSEFEGPIAAAMTFYAAGRMFRTDWFRSQIHVRDGRIVSLEPSNMPTRRVRVIERKGQPERRREFVQDVTATGVPAEKADAKPGEKFLVTEA
Ga0335074_10000007236	F001329	AGGAG	MSQNHYTTKRKRRPKNNKRKDSTAATMAKLRQLAAADAKKSG
Ga0335074_10000007316	F000348	N/A	MKKALLIFTALVLAPTLVVSLVLLAAGDWLTIGQTDAGATISVSSVHKLRDNQRVALVRVDYKNPAQLPQGGPFVEMRARVRFNCASGAAVPSSEWFYTRDRSGRFVVSKKAWHDDQFGKAPEGGFANMVSKSVCK
Ga0335074_10000007327	F022484	AGGAG	LPSRLAEQVERIARKRRLSDNRVLVELVEQGLEAQKEKEKAFFALAERFRAAADPKEVKQLGDEMGRFIFGE
Ga0335074_10000007379	F001485	N/A	MEKKIFWMVFVLLGLLADFLLPFWWAFFATIPILFISWWVAYRSDWF
Ga0335074_10000007383	F042507	AGG	MRILNAASRRGLDIPSVHAEAAEQDHQVTLVLDVNSKQVGQLYREWYAIADVTYVRSGAAQSVEWRSPHPPATVTIEETRAARA
Ga0335074_10000007450	F000157	GGCGG	MGAESSLRSTDSRGRLSLHKILRRERRTVPADDLASLLSRVVETKAEYDVRLLAQQLGTNYRSLMYWLRGERHVPAHLLPRMCVLLDNYEALDELESQAGRVAFKLPEPDTSLEKQLVAVSNLIKEVGEALESVGETLADGVVEESELRTTIPKLESVIRECASLKYLLEDLSRKRKKKKTR