Scaffold Ga0335074

Basic Information
Taxon OID	3300032895 Open in IMG/M
Scaffold ID	Ga0335074_10000005 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032895 Open in IMG/M

Scaffold ID

Ga0335074_10000005 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	604128
Total Scaffold Genes	533 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	351 (65.85%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

604128

Total Scaffold Genes

533 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

351 (65.85%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5059	Long. (^o)	-80.2517	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5059

Long. (^o)

-80.2517

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000381	Metagenome / Metatranscriptome	1210	Y
F000426	Metagenome / Metatranscriptome	1154	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001399	Metagenome / Metatranscriptome	705	Y
F007325	Metagenome / Metatranscriptome	353	Y
F053482	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335074_10000005107	F000426	AGGGGG	MKDIHEVLRQKQARYAQLGKQIEALQQAAEKLREVAPLLAESDEEDNAVLAEVEDGSAQPEAMTAKAGASTGAAASSKSRPTAPRWP
Ga0335074_1000000511	F001399	GGAGG	MKLNDSITTYDVAEALQGETGKFEITSPNGERYFVTCQPGHSIVSLEWAGSEPNLQPFLVRKVAQPVSTEGRSKRSAAA
Ga0335074_10000005143	F007325	N/A	MDGLGGPFRWGKVVAVAALVAAITARAMPAAEPTLDELKARVSAARIGEKPRLCVEIAERQLTEADKFYAASQNDRGQADLTDVTSFSELARDYAIQSHKREKQTEIAVRGMIRRLNDILHTLPHEEQAPLKGAINRLQRVRDDLLLAMFPKAAQ
Ga0335074_10000005253	F053482	GGA	MMIVVAIGMTMVAITFVTMMPSFEENHVDQAYDTTLSAIRTYRNLAIAQSNRYILTFTAPGTITVQFWGYAVPVSPAPVTVATYKLPPDVQFAVETGFPAAAPDSWGTGVTAIDFDQGMGLGSQDYIIFYPDGSSQDDLGNYNSGILYLTRPGVLYSSRAIDVWGATGRVRGWRLYSQGGVNKWVQQ
Ga0335074_10000005259	F000381	GAGG	MCPACIASTAAIVAGAGSTGGILAVCIGKVRNFFRVSRPGPFQKALLQETTIQKAKEK
Ga0335074_10000005419	F000978	AGGA	LQPIFCLRCRREIEAGDKSVAVYMFAQTVGLRPRQKSSAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSTEPGLNAAAWESLRGVAGLLGAGDASDGREKYRRAG
Ga0335074_1000000585	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDSLVVGEKTEAEVQESVRRWWALIHPADRPIAQKYLLMVLGRSASALNSMEVALLSASTPEPVHSPVVPAQIAAKRMRLMERVVKENGARPPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335074_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences