NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10183876

Scaffold Ga0335069_10183876


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10183876 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045207Metagenome / Metatranscriptome153Y
F059117Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_101838761F045207N/AMSRKLALAAVLVLAALSSGCTADVLGRMKGFDVMQIVQSQPVTEAVLKARDVGRLLAGIEALILAFVCWYRIHVGVPWLAITKDWFLGIFVCAYVLTTAGTPAGLERWVWDVGVYLGQQFNPDRGFLMENFDRAVGQQGELILGLQKIIPTLSDDERRLVEAVGWQFSSPFVAGFVWLNAVAIYIMKMIMQVSYAWLISFYWMLTPMVAPMVILPQTRTVFLGWLRSYISVALWPLFFAFAERLALAIPWSAWLGAADGTTDVWGLTVNVLQGEMMLFIFNITFFFVFLSIPIASYMIVSGASRPFRTL
Ga0335069_101838763F059117GGAGGMKSTTSRFVAIWASHEARARVWFRLFLVATAALLLSLITTIRVWHRPREVVRIGCDGIPQVVALDNQAYSEPNEREIRAFATEFAIFYARSDSFSILNDLVWCANRMAPDLRERFKRAVRGSAERPGLIPVIEKLQRRTQIDPATLTVDVDKRPYPWKVHVKGVRQRVGDNGPGETFDLDLDLVRTSRDEHIEGLLVWGIRAKGEPIETVLASIGTEGGRIP
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