NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10157604

Scaffold Ga0335069_10157604


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10157604 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2805
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F020633Metagenome / Metatranscriptome223Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_101576041F020633N/AGAGNLALTSFVDSESAATAQQPLGLSSPGLEDLELPINVLGERVAFQIGTSQPGAWFKLQRFVPSVRVDPWAPVRGMN
Ga0335069_101576042F084509AGGAGGMPSYGNVVPPSSVGFGESAVVIASTDTIFPAPFKSAQVALAPNFSSGKIRVSVELVWSGAPGSISVQLQTADTDIDAAYSQEGSAITAVNSGNVTRAEFPDVVAKFARIYIATLPTNVTATGKISS
Ga0335069_101576043F000781GAGGMLTVAQLAPIKERDPYLYETLTKIVSAVNAASANSGVDPANPSPAPPPVAGLTVQAANGWFDLAIADPAVTRPGLFYFAESDTTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASGPVTFGSPPTAVVGGGASGPAPLPSRGSGALPNGLLRGGNGFGVVPGARVVKRTVL
Ga0335069_101576044F007488N/AMNIRTYEEKDLEALRAIHARQGFGYAFPDLGNRLFMTKLVLGREEGGKGIVGASLLRLTAEAYLLLDPEAGTPRERWQWLLGLHEATRRDALTRGLEDVHAWLPPEIAAKFGKRLTKLGWVRDDLWAPYCKRLGIPPAGVEGLEK
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Institute for Fundamental Biomedical Research
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