Scaffold Ga0335069_10007623

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10007623
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15596
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044275	Metagenome	154	Y
F076810	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_100076233	F076810	AGG	MLMTPGPGNSNPGFSLIIQAVPSGNAWFLDLAVGGRHERIFANGCGQESVWRRNRQAPQPFTDLEQAKRAAEEELGRRLNRPVRISPQVELYCPSDAPVYDYLKNDVEFARACYDAQTDSIRSVPEDCRLVGWPKGDLQRPRFHIPKDGAHIPADCRWQTICPKAHEEFLKAHNQRSGPEKAKRWLAWLISEYRKYGLNS
Ga0335069_100076234	F044275	N/A	MADRFPIRYEIGGKIASAVLDALLGHLLAIQMTREYGGCDDEASLRKEAEQISGNSSLKVCNNELAPYMTDELDLFLVEHKLAFVKRTDSRHEYGGQIEWWRPGMKHLSKWEFTNTEATEVYVSVEFLKKALGQRKTLRKVVAELEGVAPDPGPLILLSRISKKVCKCRRVPLANRRVHADRQGTAA