Scaffold Ga0335069_10004888

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10004888
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19748
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (41.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037183	Metagenome	168	N
F046997	Metagenome	150	N
F050262	Metagenome / Metatranscriptome	145	N
F055381	Metagenome	138	N
F058854	Metagenome	134	N
F058930	Metagenome / Metatranscriptome	134	N
F072991	Metagenome	120	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_1000488810	F072991	N/A	MKKTIFTLIIVASLVTQVLAQIPTIDVSSLQQLYQQYQTMQQQLDTSKGILGQATQIYNQEVKTYETALGNIDTLKAKAQAWLNSFTRLASTDFFAGRAAPIQSFDSNINYWANQMAYGQRDLTSMEQRWETALTRVSNGTATDWEQRMALGGYNSRIIDNANASRSYGSNVLAQSQSVLDDTEDGTLIEQAGAQNALLYQQTALLDKMKNDVNDANVAEAAQREQQLKKQRDQQAIRKAMSNIPVD
Ga0335069_1000488812	F037183	N/A	MADTVSITLNLPKELVARVKAVKPSWLADLTDEEYLSHVFARGNFDNYLQQLENANAAVKKLAADLNLHKKGTAASSKNTKPGQRLVSKTGPNQPAEKSATPPVV
Ga0335069_1000488815	F080330	N/A	VKKSAHLILLLLAAGTALASDPFQGNDANQPNLADNVRLSTRIVENVYLMPAQITKLIFPKPVEEVSVNTQVINIGRNPPDSKECYLLLSPKVAKGDVDMHVVMDGKTYTFRLLVGRETVNYRKTYTAERGGSGRNLRKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDLGSSPQGATYLWDGAEVTLQSAWHYYPQDVVVLQVEVHNPTSRAVYLSATQIEPYIANTTFRYLLTQQGTKVLLPGQTDIKYLFLQGYGIDIEGARFELRLPASGPQLNAPPQQDP
Ga0335069_1000488820	F050262	N/A	MRIIHPCRRRTSGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKAGVVQALSDTIVKYQTMGVGETNVPVSEDLLPHIPSGTMRLEKSGPANGVYLLQGSVTWRAFPHGDASFLFHEQLSLEVPE
Ga0335069_1000488822	F055381	N/A	MKFLLLFVLPTLAATGASIRDVCLPPWYDRAAFQRLQLELKDLLANYVQLEHPCTVFLTNHVILVSNGTARATLLIDLKRTPATFPIIVMAPDATGRMTPQQKLICHLSLVPSPIQIEVRGDSTFSLTNLTGEPFVLEHADDLTITSRDEQHIIGTLHGKGRLKLRGRAEILLNPRPRP
Ga0335069_1000488823	F058854	GGA	MWLCVLCLSISAWRSEAEIIDDHNARWQGTAWQANRLDLAGLTYQGALFPLITQGPGTFSLPTGAFVLRLHVLPLKTDAREPVLVLWGRVADPQEKPLARLFLRKGRLVWVCPIDPKGDSLFDAPKDVELETKALTPGLWATVDVLVNPLPYQQTFGWSLEINHPQNPAKPSGTPLHLARQLTAADWSLQKIEVPRLRAAWLGQMELLPANTPPAQLRPNIIRQ
Ga0335069_1000488824	F046997	N/A	PRALARDKVEAIEIFRASHQPLLWQRAVCGLSCIENKLQAVQTNAAAEPSAPQVLLGDRKLTPHADVSQRTYTACQPANGMRVYVDRTRRRAPETYVAPEILEAGVNILIPKGTNEVPACLAGQELEDYLHLRCDQKLRSGGYWKELHDRRLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH
Ga0335069_100048885	F058930	GAG	MEKTRLVIKRKAEKVQMQHVNEINMKTLVPKFLIGLFALLLLASPHMALAQTQGGLTVDNFNDAANESSGLTSTLYTVTHYALYVFYLLGIIFMGIAAIKFKGGDMEAMGKNLGGSVLLFLVPKIVETLITWAAK