NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10001194

Scaffold Ga0335069_10001194


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10001194 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42044
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (93.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001559Metagenome / Metatranscriptome671Y
F003175Metagenome / Metatranscriptome503N
F004122Metagenome / Metatranscriptome452Y
F007872Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000119410F007872GAGMPNRDLIRASEIADWCFCRRSWYLSARGVGPSLVQIEKRHAGVNYHQQHARSVDQARSVMNGATRVLLVAVVLAAAYWFWAYAR
Ga0335069_1000119429F004122GAGMTEKGLADSERRSAELRYEWQSFLGLLPVLDLRPMDPVLYQRSLTAVWRSRKSAISRTDLHQAAGLGFQAETVAFDLLLAQLVREEILEPIISSPFHFQIQRLNWTHPESAYAADDRRSLSAIVREEQAARFRMLGLLDARILNPCLPEKRVQQIRKERDELGQIYEATWLELENAIGSQSAEAIRKSVEETRQAGVVQLELPLEQKRTFDPEGETRCNQ
Ga0335069_1000119432F003175GGAGGMNRIELNGKSQGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPSRRVNCVGPARLLLNLDDARKLAQFLGEAVESRPPVANIEHGELVCECGHRGTPRLEESGYQVSHTLVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCDRCGKLYLLPPDLHIDWR
Ga0335069_1000119437F001559GAGGMSEVTQGELNGPIAVRKWIGDVSADRVGQVWRAEDHEALLRTMRAADELTLALVALARREALEAGLGTNERMDLDGIRSTTEPVGANIHAHSD
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Institute for Fundamental Biomedical Research
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