Scaffold Ga0335069_10000244

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10000244
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95368
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (57.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000633	Metagenome / Metatranscriptome	971	Y
F003185	Metagenome / Metatranscriptome	502	Y
F055025	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_1000024414	F055025	AGGA	MSILNNVIGTQAVDEICSRVKKLGYTTSGRIRLYGEELEVVSEPFFEAEGIAVQVKSRKNPEVRVVRLPSTVVQTANRNHAA
Ga0335069_1000024442	F003185	AGGAGG	MNTSRKRTFAVVAFTLLIFGIAWAQGVPTGSSVTIITAGDISITRTNGKTAIVINFGSGKVAGSDTRITISGPYSLDANGGVKEVKGPQGVELHVLSHEELRLQAPEISDWEHTHKFTEYTACSKIPAFSACGHPVCDQFGHPKDQCRYNSETGCACVAPGGGPCADSARHNRGRQSLTDIAGD
Ga0335069_100002448	F000633	N/A	MFFVNFVPEEGRWFCYAPTPTGLQKIPVSMDTAPFDASFMIAADEQAKEVLN