Scaffold Ga0335069_10000157

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10000157
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115534
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (56.90%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050854	Metagenome	144	N
F056466	Metagenome	137	N
F069182	Metagenome	124	N
F069964	Metagenome	123	N
F075595	Metagenome	118	N
F076776	Metagenome	117	N
F098524	Metagenome	103	N
F099028	Metagenome	103	N
F104337	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_10000157100	F076776	GGA	MKLQQNHSRVPLQLRVDLIAKVWASLKPGMEFNIVYGQLLSRLEKVEEPSMEQAQALLQDPEMLMNEHEQKKAFALNARAQLRAQIVNANIPRQTTDREKLVADTLAFVGRFPELRPSEVKKLTMLRQTNGNCDLRAVPFSEVASPESLADDLESAQALDNPRGGGGGGVHFSAASQAFFLLKNELLPSERTPAPLLSVAEIS
Ga0335069_10000157101	F069964	AGG	VSNPGRTEEPRENAANHNSATYNASVNESAAKAMDIRQLREEKPKLGWLADVRFNILHNHRKLEELEFQVSAHLKSTGPLRVVTRQNLFEFALDGEKVNLVIREGRKLDGLPFQTVPEAVQLFCNEAITLHKNQHLFWHLTEDEVRQVAAEFQELAGAGGILVKKGRHTLLVQIKDGKLDLNACDSLLPAPSAIL
Ga0335069_100001572	F056466	N/A	VVKRYYLILSRLSLAVIILQALFFLHSGLNVEKFNRRIDQMVTELSRQTSSSPAAASLYREVGAQMARHQQHNREHKWLLKAILLAGLLHVGICYSLYIHFLRMGYSWTKICLHANNLSLGLLLPSPTGLAWMLAYVIGTRLYKHCCVAFSFATPCSEP
Ga0335069_100001575	F075595	N/A	MAEKLPQSLRQRLVPLFKEILAYHWVDGLTFNRLSGAVYHVLLSEENSRLAEDQAVDLAVNLTRKDRLPELLARYDSAVQQRAQQAQKQVLGIVNNMIPENTANRAKVLQDTLAMLQKFPLVRSITGIRTLVQARLDNHHQDVDEDKYLTLT
Ga0335069_1000015754	F104337	GGTGG	MTPEWEQRPEVYDSFSPIGGKLVRRAAVNWRKLHPADHGLVPGLRKAWTMCKSELGYATYEDVARRLPLRGRLHARVRQVAENLKHFWKQNPAGILMTVDRAGNNVAFKFKTPKETVGA
Ga0335069_1000015761	F099028	N/A	MNAPETFTVSEVSLRLGTTINYRRPGVVTRVTPVHLAQLYCGVPEGTLLGRVQTRTQGKFPQAAATFSESSGAVLGHDYPWLVRMFKEGPCGGRQARLERIKPGTQYQVARTFGFLGHDPCVYEEGDELTVQQFGDPIATLVRRKGKAGYTVSWPRAAFESCVETFALREIP
Ga0335069_1000015764	F069182	N/A	MPTIHAQHIEAARREFFVRVLRAPCFNVFFRPARWETWRVLAETSAGALHIARYHFYRSDQIELAEVGTAAAI
Ga0335069_1000015787	F098524	GGTGG	VTCACVEAAFYARHTGAFVSSILNRPYNGDMDEGDNDRPQRETSLVKAPNPDGSTSLERGRKESPEGVLLATSDNDVEEESVEESLGADPIQTLLNRRYPRIALHRDTLRLLQRVEWASRNQGVNDFCNDAIRYVILARESGTITFNDLHAVGAALDARLDELSVILLHLHQAVGDLSIIVEHQRLIGAYGERLKKAATTARSQ
Ga0335069_1000015788	F050854	AGG	MDELLTLAIGKLADHYQVSEDYLKRALLLRAVAELNATTDRTKPAGPAELEVVLTNLNKRLDDVLEGFRRQLVEAENAVQNANCVIAITERVTAVLRTEAEAPPLKSSG