Scaffold Ga0335069_10000138

Overview

Basic Information

• Taxon OID: 3300032893
• Scaffold ID: Ga0335069_10000138
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122828
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (83.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001021	Metagenome / Metatranscriptome	804	Y
F002363	Metagenome / Metatranscriptome	567	Y
F003233	Metagenome / Metatranscriptome	499	Y
F010868	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335069_1000013818	F003233	AGGGGG	MKVRQIIVLVAIFAGVWHTAAAQPKKKKIQIDAPPPESILATASTQSDVVLLDLTALKPEMPLGPQDVLKSYEIAMSLVAEKTATDISAIAQARQANQIAREQAEYLLQQTYQIAMMQYQVLSALHDVLKHDIDEATLQSKRSLKAANSDGVLMVPLPISPSGSK
Ga0335069_1000013835	F010868	GAG	MPIQGEPKKMEPGQPTAAEHVAAASQLLKALQQKIGEHPEIGEAVNRLEMALTSLGVQTGGFL
Ga0335069_1000013836	F002363	N/A	MNNLGVCLLIQLSLTFGVAGLLWPDKLMPIFDALMFPWSASYRMVRAHSLGAVGLALLVLVKLLAVGF
Ga0335069_1000013838	F001021	AGGA	MKKTMLLTVLSICLSFAAGVAVAERVHDWQDLRKAHDHVQEAMREMDRARAANHYDMAGHGAKAEEHLRAAEHELTECIEAARSAR