Scaffold Ga0335081_11080564

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_11080564
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 926
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001367	Metagenome / Metatranscriptome	713	Y
F013127	Metagenome / Metatranscriptome	274	Y
F031613	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_110805641	F031613	AGGAG	MPITISLSPINVDSSASNFVSAVASLSFSGNYPTGGDALD
Ga0335081_110805642	F013127	N/A	MVDLTRHGGLPSREQDLVLSVWEWRNDGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLSEKWDDAAADAMEDLIVQAVRREQQSSRRRRPFSSRSGYTPF
Ga0335081_110805643	F001367	GGAG	MPVVGSSAYNTAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKVQRALGNSGAGGFLSDDALLVVPAVTTPDASLQVSITDSTAPPNQLPTDLLVPVKPTISRRWWI