Scaffold Ga0335081_10123961

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10123961
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3767
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_101239613	F003157	GGAGG	MRDPAANPKRENAVLSGFARFGGLDQLDWLMILISVLLGTIAKQHHFLDLPDWFLEWVSPFLLMVFGYKARRKITEMVESWRERGKDTPEE
Ga0335081_101239614	F002396	GAG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPLVGIILLEILLGLFFIGCALAARARLRIQARSLVKEGPEGSTNAKAKWFDRYDVLMILAVIVIYSSMSGLLRHSGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAETHDGRSHMDAGEKQEIAGKETVERCQ
Ga0335081_101239615	F004392	AGGA	VRAARNAQPALGRGAATRRRRDRQESSKTDGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVIEFQTRADIGRAGEPILRKETLKKNNPAS
Ga0335081_101239616	F001528	AGGAG	MSEKSQIVVVLIVALFLGAFVDRITALKIGAGVVLLWTLQNQPAVFECIRKLFSFTRGGLSVRECRGGTTTLRAS