Scaffold Ga0335081_10059625

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10059625
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5921
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010450	Metagenome / Metatranscriptome	303	Y
F018138	Metagenome / Metatranscriptome	236	Y
F059237	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_100596254	F059237	AGGAG	MASICTTTPSPATLPRKRAVLDRRSVENSWLVIAAVFIVLMLIGEAALFAYAVKTMPDFLSQADVQVP
Ga0335081_100596255	F010450	AGGA	MNSIPLYRDFGVAGELTHRPRDEPAPARRGLLRLVVDAIERSRQRAAAREIARVLGGHFGLEDRLTDEMERRALQHLTGDRGFRR
Ga0335081_100596256	F018138	AGGAG	MTTMTLSPAGRRALPRERPPHSTSAVAALGLAVLAAVAIAIALAIPNLPDIGTIYVTVT