NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335081_10045122

Scaffold Ga0335081_10045122


Overview

Basic Information
Taxon OID3300032892 Open in IMG/M
Scaffold IDGa0335081_10045122 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6963
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. T29-B(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005154Metagenome / Metatranscriptome410Y
F026990Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0335081_100451222F005154N/AMGRTTDQWRCRICGFERWHVVSVKRKDGTLYTTSFYACSGCSVMFLNPAQFNALGSAAPNVEMPTVISLSARRK
Ga0335081_100451223F026990AGGMDINKAMKNPASTFGTPEALSESRELTAEQKRRVLLQWKDQLQQLEAADDEGMQQNYAAAGTTDDLLERVTNILSRINADLKRSSNSG

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