Scaffold Ga0335081

Basic Information
Taxon OID	3300032892 Open in IMG/M
Scaffold ID	Ga0335081_10016639 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032892 Open in IMG/M

Scaffold ID

Ga0335081_10016639 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11906
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

11906

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F058932	Metagenome / Metatranscriptome	134	Y
F099156	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_100166393	F099156	N/A	MANAPMPGFAGLRTDFSTWLILAGIVACWMVSVRLVPNWQRDGWRALLKSLYGLVWLDFGLDIVLRFLMLSWNAVEWGNSTPRLIAQPVNIVNSTLAYCLLFWVMVSLSYAVAVRRRSAGPLALARSITPDFAYSAALPVSLIASLIYYLIEGQTRLPLVLITPLALAANFYMVIAAIVWWDHFRRSGPKWQVSGIHLVVLLPALVRGIVSPYRETFAPIFLIPLIAAIFAGRRPSLLKVAAGALAVLLVLSTVVSSYRMVKWGNVRPQEVAQQFSEGGWMAVFSDVPTRRFHAFDSMLLTVALVPSLEPYSGRNVLLSPLLRGVVPRFVYSGKSGADAGFNFGSRIWAYDDPMARDHGGASIAPSMPGDLYDAGGVLYIALGGLIWGILLGLVDGWKRHLPSFSAAALTALVATGCAMSVERDFDNSVASLIQTLLVFLLIAGVVALTAREHSGYARRLHPTLERT
Ga0335081_100166398	F058932	GGAG	MSGGLRIACVSGHSRWWRKQRLVAKYLKMRLEGVIYPDVYCLALMLTDRFDFLLEGERVERGQYDLILAELQSSDSQLAYLASLVDAGSPPVAVIPGPPAILSRDLTDRKLRLVQHILERAAAVWAYAPELKTFCDGLAGRERARLIPWPYDLAATQKLARAARPAGAEHRILLQVPMAFHDVVQNHPFLLKGVLLDLWPELPAELRARLRFHTFIYNDRDRELYRSTGFADGLPMVLDRKLGYRAFVRFLASCDGIVNLTAGSILGRVTFLAAATARPGIFSDNSQLNTHLYPGSCVTMFDTVRLRQLLHAMLSGLVTGTADPQLLPSSTAAAEIGDFAANCARLRELLRADVPAVSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335081_10016639

Overview

Ecosystem & Geography

Associated Families

Sequences