Scaffold Ga0335081_10000964

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10000964
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46111
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (92.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006672	Metagenome / Metatranscriptome	367	Y
F014420	Metagenome / Metatranscriptome	263	Y
F018460	Metagenome / Metatranscriptome	235	Y
F032049	Metagenome	181	Y
F080601	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_1000096410	F003233	AGGAGG	MKSRQILMVILILGTKWLTAAAQPKKKIEVDAPRPESILAGTSLQSNPALSDLIGLKPQMPLGPQDVLKSYEIAMSMVADKTSADFSVIVQAQQTNQITREQAEYLLRQSYQMAMMQYQVLSALHDVLKHDIDEAAGQQARQPLKTTSSDTVLLVPFPCSAPASR
Ga0335081_1000096429	F032049	GGAG	MFSINIRPVIVGTMLMSAVMALAQTQVQRETFSVQGYQGRATVLRSHGRVFVDVQDLARITRGSLSFEEDRIILTLAPSDASEPDRDSAAKSGFSPAFMRAAIEAMASIREWGGMLQVIVQNGYPVGKAMAGNTIRAYEGRAADSVALASAAASMDDDHCGLELLRNEFNNVQAWAESFVDARNSLSAANLSTSENPLKDDQEAQKIIRCGQFLAQMFAGGSFQDDAACH
Ga0335081_1000096431	F014420	AGGAGG	VAESAEDLRNWRGLYKAALFETDTSKIPSRIEEARRAVVSRSRELFETSPNYDGETEAIENALYALQALENCLRSNTKDRRHAPRAG
Ga0335081_1000096441	F001596	AGGAGG	MSWFHASTTAGDARNHASAAEIVACFRDQRNVLHRLAFLITADEAIAELAVAQACAITLQGNSPFRNWLLEWAKAATIAGVISLQGDAIRVCEAMYKDRRCPHVEHLCQFDDERRAASLALILQTDTQKIVTKLDPLCRAILVLRIAIRSSIQDCSLRLNVSRAAVLAANCHAMTWLDQCRVKSLEDDHNV
Ga0335081_1000096444	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLSVCDQNWEFANWLCALLNELGHKSELLLNELDWEWLNANDRASRRMAQHA
Ga0335081_1000096446	F080601	AGGTGG	MRTPQTKRGNPETVRTSARPRSHERLSSSATAQVIGQVLADLGVHSRLSDLVRGAQLIESARRKPDHLC
Ga0335081_100009645	F006672	AGGAG	MSTFDTLPGESNPHVISSIINLVCPQCGGRMSEFQCEGRCCRNWLAEWEWANQATRSSNSRVSGHRARPTR
Ga0335081_100009647	F018460	AGGAG	MLRRLIPVFTLCLCTCPALCQSTSKWQIATITEVRPHPAAGEDASDPITYDVSVRVGGTIYLVRYTTPAGEIAPKCATGRELLVLVGKNTITYNDMLGQPLQVPIESQRPVTEPKHSK