Scaffold Ga0335081_10000194

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10000194
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116167
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001328	Metagenome / Metatranscriptome	721	Y
F007434	Metagenome / Metatranscriptome	351	Y
F088100	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_1000019455	F088100	GGAGG	MSAAVITTFTPESSDATATITRYQDGYESAEAIGMFSRTVKLGGIFLAGVVLMVGLVEFILNPTEHHGFPLIFALLAGCAVCLVLISQSVAMGLRGEGQLLKAALDQDVNSSPFITNAQRALAMSLRKRPPVPTCLPIWTE
Ga0335081_1000019462	F001328	AGGAGG	MPSAYFFCNHCHNKYPTHQRLFDTLYDFQRKQNAEDCAACGGTRDLHLNLDFQLGCGDGDFKVVSALLPEKLESWLGEEEEEVTFYPFVTVLERADGKQFVWMPYWHVAGKEAKYGQHAICLDRTQFESLTAQAREKNPKEVFELV
Ga0335081_1000019464	F007434	AGGAG	MQFHLEPQERKLLADILLEQEVGKYKELLNKVLDRDLRFDVDELELTATLIADKKRRLKDEIALQPIDPKPELQQQLVLLQQLEERVNEACVMF