Scaffold Ga0335081_10000096

Overview

Basic Information

• Taxon OID: 3300032892
• Scaffold ID: Ga0335081_10000096
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 177004
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 151 (84.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F017549	Metagenome	240	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335081_10000096114	F017549	AGGA	MKLVTMLSKPAAWASGWTSAVLCFSAAIGYWLAGEHKRSICWGVIGTVEVAAIVL
Ga0335081_10000096164	F050089	AGGCGG	MARQVFVIEPLPGREMCDFCCASPTARLYACRNFVVPRTKHAVFQHESIGAWSACDRCAVLIDAGHWSQLTDRALRRFANRYGVPKDEWPEVREQLAEIHQLFKEHMIKES
Ga0335081_10000096165	F073812	GGA	MTDPRQELESALAPLAWVLNFIWNTFRLMFWFFMSPILIITWCFHHPVEARLYLVSAIPLLWGGNWATRSVLALFVVLIASLFGRTMHRICWWIIKFALLAGLIGYVYLVFKLA
Ga0335081_10000096166	F006757	N/A	MRDLAVLPPIKSQLRAALLSLAAYKEIPTEQLIVAARALPGGTKVHCPDRLTAIVLLLGTRLVDLS