Scaffold Ga0335070_10166283

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10166283
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2227
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_101662832	F003157	AGGAGG	MLDPEANQKRESAAMSGFASFGGLDQLDWLMILASVLLGTVAKQHHVLDLPDWFLEWVSPFLLMAFGYKVRRKITEVVESRRDRGKDTRQE
Ga0335070_101662833	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARQRIQARSELKEGPQDSTKAKAKWFDRYDVLMILAVIVIYSSVSRLLRGAGLSAGTVGILPLILFAVGILLKPRAVQFIERRRKKRTADTYVGISHMHADVKQETAGKETVERCQ
Ga0335070_101662834	F004392	AGGA	MPVNGPETIADSKTSQPVTSEGRSVRTAKDAKPAVGRAGATRRRRDRQESVKTDGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNSPAS