Scaffold Ga0335070_10020725

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10020725
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7593
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012587	Metagenome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_100207253	F012587	GGAGG	MIDLIERHDRDRMMTLFLRVIFLTLAISLVYGCAKEDKDLAKLQEENRILKEKIALFESQTRPAATSKPEMKEEFLALARKLKASPNDFVGQQIKLHCRFGGFENKFLNDTNGPKFLSTYFVGLIAQSGKEIEEPLFDHLFISKKEAKEQGVYHLGVNDLITVYGMVNSAYNKEPWIEVYVVKKGWE