Scaffold Ga0335070_10016299

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10016299
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8626
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F012173	Metagenome / Metatranscriptome	283	Y
F018587	Metagenome / Metatranscriptome	234	Y
F018799	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1001629910	F018587	GGAG	MEIALHPLIVRVRSLRAFIAASLRKMLRMEPHDGDFASQRVCPFCGLITPRYETCCLECGKALKAA
Ga0335070_1001629914	F018799	GGA	MSANTFHSAGVGFENGYKSEALAHILEITMQHQNSFVLPPNLGRQGLLQISTPTAEETAAAAGLIKTAFDRLASFPAVI
Ga0335070_1001629916	F000042	AGGAG	MKNIKFVVRVSRGGDRAPSYVQRIDPTPVQMTTNRKLALTMGKLTAEDAVKCLQTSQCIPELVPVPVVG
Ga0335070_100162995	F012173	N/A	MNTIMPPASLLSAPTPGGVKKKRVLLVDTCQAKRELRAEVMRKFGMDVDCAANADEARSWWRADFYDLVLINMEQSREYRDKFCDDVRRATPPQRLAFLVGQPEYLADSPNVNEEVLLKKADDEVMDDMSLALAADRGDPTQRWGILEASRRISAVRSKSRARTQAMRALPDLPRDSEGRASKRTPTATNLDDLLREELR