Scaffold Ga0335070_10003820

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10003820
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17550
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F017965	Metagenome / Metatranscriptome	237	Y
F029198	Metagenome	189	Y
F097840	Metagenome	104	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000382010	F017965	AGGA	MSEKIGHRDILYLFACQLEWHTERRLAAYHELIAALDDQDGDIRCLAEVLLHRGPPRPERTATFVECW
Ga0335070_1000382011	F006399	N/A	MLVKELRSESENEWQAICNLVDRCTMATSALNSRVQSLVSEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHVDPACPTCHHVRSVLLAIAGLMPGELTLSRNSLTYNIDSHSNSIICLPALGSRSAVWVSIYVFLNRANGQSFETDLLNEIKTFLNRWGIHQR
Ga0335070_1000382012	F006278	N/A	MFRAEIQWLASGPTLKLEGRLVADWAEQARCLVTKDVLPKGLIVDLTEVSYVDSVGEQLLKWLASVGTVFVAGSIYAFAVCDRLRLSPVQRVAERRKRQHENHGERFSITPIQLRPFEGR
Ga0335070_1000382013	F001596	GAG	MSWFHSSTPPVDARNHASPAEVVACFQNQRDVLGRLAFLITGDQAMADQALVQACKITLQGNSPFRDWLLEWAKVATIAAATSLQGDEIRVCEATYKDRRCPHVEHLLQGDADQRAASLDLILGADTQQLLTELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCYALTWLQKREVKPVEEDHDASHAV
Ga0335070_1000382014	F010114	GAGG	MIIELNDDETRLLRTVLLEQAQEHLSYADTSEVAKRLYRLATRLERPVREVPDITIA
Ga0335070_100038203	F105952	GGAGG	VSTRRGAPRNTKRADSIGTSAGPVSCERVNSRITVLAIEQALAELGIHARLSDIVAKAQSIENGILQSRSRRKPEQMC
Ga0335070_100038205	F097840	GAG	MTRLAVRTVMQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRDGHNVLGVWNQNWEFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVQHA
Ga0335070_100038208	F029198	GAGG	MDSKPTSRAVRVNGEVIVLHCWACGTAHCVNLELCVPGELTHMVCSNSNCRMSMFLVNELVVDDKASKQMTNSELNARATYSRFWK