NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10003107

Scaffold Ga0335070_10003107


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10003107 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19290
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031240Metagenome / Metatranscriptome183Y
F052920Metagenome / Metatranscriptome142Y
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000310711F031240AGGAGGMQSQTNESHPGATVRLFLAVVNQAIADVLENGKEAEEAERWLLSKDFDILDRFFACPAMPVEARLQKATP
Ga0335070_1000310712F052920GAGGVKYQAISHVIAACTAPFPERTDVHWETTNLQVWNAREGAAEQHELVYEVSWVDELGTWRRFLTSRRKVN
Ga0335070_100031079F105715GGAMIRAEFIQRNEGRALKLEGRLAGAWAVQVKSLLSRHFVSHGFLVDMSEVTYVDPVGEQLLTWLRDLHAKFVAETSYARDVCQKLQLDLQEKETLTGLSRQRIKLLRS

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