Scaffold Ga0335070_10002343

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10002343
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22082
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010407	Metagenome / Metatranscriptome	304	Y
F016826	Metagenome	244	Y
F054528	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000234319	F010407	AGGAGG	MRSISIAILLSGIVLLGASSCATVSKAPLAPGEVRLLSMDIVGAGVEANSSFAVNVFFEASGHPRIERACFYESGEEPSCFDSSDISYLTLATKRAFQVYLPGLSAGSHMVECYAEYIRDGETRKTNVVFTQIIAGVHVGLLLPPNL
Ga0335070_1000234322	F016826	AGGAG	LLKRRWAILRSKESKLVKDLKESTLSFKKLGKKYGVSRQAIHAFWTRQGIKRPKRPKGHQTEGCSLCQKLIQISKRPHSEFLSIHTIVKETGGSRVRCHYHLRTLRSKGLVNEKFGRLLSPRTEAAYAIYFAEPLPIRTIGRKVGMKNFHSIIKQHRVKGWNIPPSLYDGRKRGRVKSKIQRGKSGRKEYSLRKSFGGR
Ga0335070_1000234339	F054528	AGGAGG	MDVKTRWKRTKGVGILSTEGTFLPLPSRGEDLTLEISASPHTWRILYIMSFAKPGDIVNIIRNLSKATFDSISAKSGREEFVDKVKRYAAYVYCWAEYWLKKPQNQWPEPLNELVRKLGKYAYRGRKERPESWRVTAYIMEMDFGKEREKYHLRKWTKDPEAFGRTFISNNKYAKFVKTICRD