Scaffold Ga0335070_10000285

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000285
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59043
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (71.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052576	Metagenome / Metatranscriptome	142	Y
F087791	Metagenome	110	Y
F106140	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000028513	F052576	GGAGG	MDQKTVFTQMQQFGSEWLKLMAESTSRFTAALSEVEKFEKQGVAQAVSAVDEAGRVAKEAITAGEQISAQWRKAMNEYAQRTLDLITPKN
Ga0335070_1000028523	F106140	GGAGG	MNSETERTESSSWMRVRSVAAGFLCVMGLPVALALADVQPSEASSAPSFTESVPASLHVAQAGSDIGPGSDEALLAMSPSGR
Ga0335070_1000028530	F087791	N/A	VSRNARIALVSSLLILAVLVAATLMAEPLVHPCPSAVEQCGRICAGQTLGTLPWRCERVTRCDCPRPLPWPHRLHSH