Basic Information | |
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Taxon OID | 3300032829 Open in IMG/M |
Scaffold ID | Ga0335070_10000030 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 212252 |
Total Scaffold Genes | 206 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 167 (81.07%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Florida | |||||||
Coordinates | Lat. (o) | 26.5008 | Long. (o) | -80.2398 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005756 | Metagenome / Metatranscriptome | 391 | Y |
F016298 | Metagenome / Metatranscriptome | 248 | Y |
F025223 | Metagenome / Metatranscriptome | 202 | Y |
F031369 | Metagenome / Metatranscriptome | 182 | Y |
F048908 | Metagenome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335070_10000030119 | F005756 | N/A | MRKKLLLISVVGGVFITLLAVALRAMGIYRPVPYLTYPGSYLMGAFVDRMLGWIPWGLGDNLISEWIVFFLLNVAGYAFVIFLILRIFYPDRSEELPPITG |
Ga0335070_10000030183 | F048908 | GAG | MSISKCVVRLKDSHDTEHSVVVYAESLYEAALRGLNQLSDVGWESDGETIERVEVEIHQEPTKHVVNVPKLLKWVKQDSGRPAQEAQKQKLRKLIGMR |
Ga0335070_1000003070 | F031369 | AGG | MHPLANTGGKESLRQERQALRLLCSNLIRPLTRVELCKLLAPAMFQDLLNRVAFEEIQTAGAIPAARLREALPARITNRGFPDFELSEFLGKNTATESEIEELFRCILELIRIGHGNDELST |
Ga0335070_1000003075 | F025223 | GGAGG | MLMLAKVAMGLGATAAMAGAYVFHEGVIRVDVDEHRDGGSHVHFWVPATVVSTGMHFVPADKMKDAAAQARPYLPVMREVAKELEKYPDAELVEVESGEDHVRVAMVSGKLRIDAVSHDGDIVHISVPAGVLRDVADELEAKAPGV |
Ga0335070_1000003088 | F016298 | AGGA | MERLGFAWKNFDDQQAIIRAADLKAGYLVTFLLFFGASTIPLAQQVLPKLRWGTPGEILASGAYGLTYLVFAAGFVWALYLISHVLTPRIARHHAKPSDGRELLYYEHVVRHPNSAAYFEAMSKVSPEEMLRNVTDQVYELAMICKAKVDSLRQFSQAFKITLVAWFVSTGAGFWIMTWM |
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