Scaffold Ga0335070_10000023

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000023
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 250110
• Total Scaffold Genes: 229
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 146 (63.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006317	Metagenome / Metatranscriptome	376	Y
F019162	Metagenome / Metatranscriptome	231	Y
F066227	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_1000002312	F019162	N/A	MSVYAVLGLLAGFALDGRIRVAVWVFLGGIAIKTVLVVLKREQD
Ga0335070_10000023211	F006317	AGGAG	MTRNTHFFGFLVLPLAGLAGCSSAPSTKPAAPARDKIQGKALVALNESTALDAALNAGGPSVYLVDGLKRYRLFFNKAFEVSPGKEYVAEGIYAQKAIDAIGDPGQGTNGYPPEASCGRVVRMAWPGLAFDVTDSYASSLRAKVNRFPARAVFLVTGIQLAPSATDSAKKKDDAGNEEKEEPKVSVPADKQSALLIEGPTVLPAPLWEPSGGTAHCKVVVDEEGKIAELNSGAQLCETVPWSQFRYKPAVKGGHPIRVNTEVEVRFDKRT
Ga0335070_10000023219	F066227	AGGAG	MLNMKWTVSAIMLAAALAGTTPQASAQSQHYRGDFDLPFEARFGNVILQPGSYTVSMLEGAKGIRITGDKGSVSILAASYDLTPGTEKGRMVLVDSHGIYALRSFESGAIGKALHFPVWKNPRGAAERTAAKLDVGMP