Scaffold Ga0335070_10000013

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000013
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 313286
• Total Scaffold Genes: 263
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 214 (81.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001195	Metagenome / Metatranscriptome	750	Y
F006297	Metagenome / Metatranscriptome	376	Y
F015633	Metagenome / Metatranscriptome	253	Y
F016707	Metagenome / Metatranscriptome	245	Y
F033122	Metagenome / Metatranscriptome	178	Y
F042115	Metagenome / Metatranscriptome	158	Y
F099010	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_10000013139	F016707	AGG	MFWRNAPRKKSSLRTRSSRFFLLLAAASVFCACLHATDKLKELQSNFDKETHAGRKVKEFQRLANAQFAAATDAANSGNFVDVGFIFEKYRDNVRAAFELLRKQEPDADKHSGSYRQLELGVRQGMRQVEDMLLVAPEEVRPPLRIVHQDLLDMDDTLINLLFPRRTPDPVKVPAPAEAK
Ga0335070_10000013174	F001195	GGAGG	MAKAALTRTNLLLETGKIARLRKTLRSRSNSEAVRIVIDERLAVEEGLHALRGLRKRAGIEDVFGRVRGKGK
Ga0335070_1000001321	F015633	N/A	MGVGHIVARMRFQQVIPAHLSKPRLLIAAALLLFLPCIACAQTEPPRKLTWKSVEFAIIRFNDEAPNSWNIYHGEKKGIVLVRLWKRYMLVRIADEEVYDIDPRKIAVHGDSVDWSPADIPDKPIEITEWKARNVGSMERIRFRFGKNGHYLEIQLPLAINGDPMY
Ga0335070_1000001343	F099010	N/A	MQLAALISILMLAASPSAIGQSAQPSSATFHWLDSRKDATIFERIRTAFTDELKPDDPEKVKPYVAQGYKWISRIGVFETSALVLVGEREMRTSTYGNYFVAFNYDLKNGKKTALTSFNKGFTQWKFEKLIRFDSSRAPDVVFTYSSCTECEADYLLGSFRLDSTETKWKIRTWSEKSAEILIGSDYSVGTEEDSKYDCLYKFADFNGDNFDDLGVRCLAITEEGKILDDTTTIYTIQHGQPQVLSVKDPKQLAAIQDQLCIDAKKSKLCPSK
Ga0335070_1000001349	F006297	N/A	MIRQPQKTGRPPEPQNGQPAESGEGWLGHNRSAKRRLWERLNPRHRKELRMLAEALALQQNHARLPENTRSRLDAALADLDRVIRRIAALLAEVARRTPPPG
Ga0335070_1000001362	F033122	GGAGG	MESSELLTLKQTGLVEVSGWDEDELFFVERSELGWDEYAGKHVTLTHMLAEGSIIFVRPILTTATHRANPIPYEAEFVGCNPEGHHQFRLNGVQPRYARENFTVN
Ga0335070_1000001368	F042115	GAG	MTVKLSNRSHRVLYMVVLLVFAVALTTALVLAVERSPEATKSSTLQPNTVPTMSPVCLWGDSNV