Scaffold Ga0335070_10000012

Overview

Basic Information

• Taxon OID: 3300032829
• Scaffold ID: Ga0335070_10000012
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 321321
• Total Scaffold Genes: 303
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 249 (82.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5008
  • Long. (^o): -80.2398

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000442	Metagenome / Metatranscriptome	1132	Y
F012370	Metagenome / Metatranscriptome	281	Y
F024034	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335070_10000012144	F000442	GGAGG	MLFATVTRGKRAGVRLVPHRFRDNRYHVQLGKIGPYIPVTDYRDIPSYLANGYSLLMSEGADRCTPTLIRPASIRGWRPDLREPFYRSL
Ga0335070_10000012153	F012370	AGGGGG	MRKEFRIKAALGLLLATLSAIPIHGQKNTTSTAQPEVERHSFAQNFAKALNSAEADYFKQHQAYATWDNLLGLGYFSSSGTKWSAPEFPTVVHALYGSGSEVVPGWRLRLHLSNNGKAYDASIEDVNDLKCGYAVTTDERGMIRQGRSVTCN
Ga0335070_10000012250	F024034	GGCGG	MSKRDKGRKWIWIFLGTIAALQLYFVRELLAAFAIFALGFALIGALIASLYLFQKTWEAGVARLAASRHPLVLAARRTVAAAEDWARRPVRRPGSQPVS