Scaffold Ga0335080_10006600

Overview

Basic Information

• Taxon OID: 3300032828
• Scaffold ID: Ga0335080_10006600
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12000
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068332	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_100066009	F068332	GGAG	LRRILLATLVCAVMRGSVVYGSPVCEEIRSAKAKVYGYHLAELNETQIELKSRELDAFWKQVQAAGPEGATCIRGMLEEEKTDHIFQFDAAQMLFPADKSPETLQLIRDALAQADFQESDPANYLELGLELSQAGVDAGPLGAKLLLYPNATIHISEHSLDLDEDSAALFLYGSMEPSRASNALAELLKAPESFVRSAAAHLLAEQMTEESFRALSKWKGTGEVEEEFRRNDIEAIMRYKPVNTADYANPKFTREQVLQAIAALPHTRKEFDEVMATKGAAFDKQIRNTKATQQQITQAVADSLPIYGVADHVAFISSAVATLQAEDFGTIREARRKALSNVSDESFSEYLAYTQIMIGMLNRLDLYKEYRVH