Scaffold Ga0335080

Basic Information
Taxon OID	3300032828 Open in IMG/M
Scaffold ID	Ga0335080_10000032 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032828 Open in IMG/M

Scaffold ID

Ga0335080_10000032 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	154967
Total Scaffold Genes	136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	108 (79.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

154967

Total Scaffold Genes

136 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

108 (79.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000870	Metagenome / Metatranscriptome	851	Y
F015624	Metagenome / Metatranscriptome	253	Y
F051484	Metagenome / Metatranscriptome	144	Y
F077661	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_10000032120	F000136	AGGA	MAKAKLRILYGEGDGEVLAQQAPAFEKAGHSVQKAEGRKNVEESLKKSAFDLVILGSSMTRNDRHHLPYMVKKASVGTKVLVLHADGSRHPYVDACVDTGTSVESVLNRIEAMKIAGAPQAAAAGAGK
Ga0335080_1000003274	F015624	N/A	MKAENRKIFDEEYRVLAVESQRLTIQGVSSGEVLTIVTQNPELPLTAADYPPGKLISLSDPISSQPS
Ga0335080_1000003281	F051484	N/A	VPDIGAGTVANGVYRNRALGLTCKIPAGWVLRTEEMNARSEESEDTQVSQTPPDPGHPSSETVPKSAASDRDGLVLLAAFSRPPAAKGEDVNSSIVIAAEKVETYPGLKEAAQYFGPLTEVAKAQGLTADEDPYEIQMGAKVVVRGDFHKDVGSRVMRQSTVVFLAQGYVVSITAIGGTENEMEELLDGIEFVAAAQKK
Ga0335080_1000003287	F077661	GGA	VSRLLVVTDNRSKKTDARRRGRATLRWVVRLVLASIAGAWLFLYIDSVHQRRRAEAFLADLKSLDFSTAGFPEVRDIMIRNGGTTWKRRAQDTCTPRDCYFALDIKSQLPRIPLMGRKAIFLYTILPYIGVRSWVFRASFEVRDGKLYEGGMGVFEYRMKRVSWNVYWLVPLTYGVETQRDAASFKNGPCSSQEYQVSVSHGVIHIPFDGLETCVVQSAGTSVKRAFDVHLRCLNNPFRNCRFDDLAPSAWADYLAKGGTSSPDPHQ
Ga0335080_1000003294	F000870	GGAG	VSYGNGDQRPLQEAVARGLIWTSDRTFEGWTCSQCGWNYPLPTLLSDADARTAYDRLAAAKFREHKCAEHAARLMPAEGEFTSHIKKLISQGFKPKDAVELFLQEVGLEYRNDPKALARAKTEGEDFLRRLKAGLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335080_10000032

Overview

Ecosystem & Geography

Associated Families

Sequences