Scaffold Ga0310342_101411302

Overview

Basic Information

• Taxon OID: 3300032820
• Scaffold ID: Ga0310342_101411302
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 827
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8644
  • Long. (^o): -158.9436
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F017222	Metagenome	242	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1014113021	F069325	N/A	NGMSVCSNCYRSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPSAMFGKSKKVTKGLTALTDKQFGT
Ga0310342_1014113022	F010477	GGA	MKIRYIVFVPYLIFIGVIGGNIMAEAIVIGICLGTYDLLFGNGGGGRPA
Ga0310342_1014113023	F017222	N/A	MEIKLHARNIDDKLRIALYAMTSFAMADLIPSERLRNNVSINVHLKHHEEEGEAMLEEYANRYRPRDFKVIIDHHRAEIDDYGRTRSETEWGHTILRVLAHELVHVKQYLMGE