Scaffold Ga0310342_100079459

Overview

Basic Information

• Taxon OID: 3300032820
• Scaffold ID: Ga0310342_100079459
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2939
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8644
  • Long. (^o): -158.9436
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000747	Metagenome / Metatranscriptome	908	Y
F000929	Metagenome / Metatranscriptome	830	Y
F051201	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1000794592	F000747	GAGG	MTGIIVKFLLSLLISVIFSVRGDARMFPTEFPVKAVCWDNVEEALQYHQEILGEYPVGKGWIDSKDGPSFGAIMYNPTKPSWTFLSFHKKEEAVIVCAVTGGTEWEIIHPGDEREKLEL
Ga0310342_1000794593	F000929	GAG	MTNGNQLGKSLSVGHIVATVGLIIGGFTFIYDLRESVAIQSFQLDTVEKRLGRVVARTDDQFGEIMSHLIRLEEKLDAMVLPNQVYQKAR
Ga0310342_1000794596	F051201	GGA	MNITEAAQNKVDQVLKGEGFLEVCLEGGGCSGYQIKLKGTSEIPSD