Scaffold Ga0310342_100015758

Overview

Basic Information

• Taxon OID: 3300032820
• Scaffold ID: Ga0310342_100015758
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5627
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.8644
  • Long. (^o): -158.9436
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024570	Metagenome	205	Y
F031530	Metagenome	182	Y
F053336	Metagenome	141	Y
F066845	Metagenome	126	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310342_1000157581	F079193	AGGA	MKCEAVKTIFKSEDYGLEDHTLTVDKIVELDENGNVMVTKLIAYVIDPLDNAMVFNYSPYAKLGELLDSAKVWIQCGCPSDCDASGFPRKWNREALHEWVAG
Ga0310342_10001575812	F053336	AGGAG	MQEYFEYLTDLRDSGTMNMMWAPTMLQADFDLDKKEAREIFSQWCESLPSDGG
Ga0310342_1000157582	F031530	AGGA	MDFVIYKSEADNQGRLVELVRNEHCEVYEVIVDGIPVFNCTDYKQAEHEYNMECV
Ga0310342_1000157586	F066845	AGGAG	MMNNKQIAIAKHNASKKRHADIFTGCLSAGTLKQTHKKIKSLKILKKG
Ga0310342_1000157587	F024570	AGGA	MNYQPYEARMAKDTPTGMRYLVRCNRLGKWAICSWVSSTGAAIGSPECQGKYEYVMKKWHKLVGKYVSVT