Scaffold Ga0335078_10450926

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10450926
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidibrevibacterium → Acidibrevibacterium fodinaquatile (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_104509262	F041548	AGGAG	MDTQSLQVQALITFVMPLLIQLAKRSQSQALAWIDQSKPRISVLASGVAALLTSMGIQFVHAPHSLTVSWPDAATLARGFVTFLVTAGIQFAAQHALYEGFWRHVVPSASNQSSVVGHQKGRTVFGP
Ga0335078_104509263	F041547	N/A	MISANEMQALLLGAGGFVGTGMAGVGAYRLFAAATRGVMRVPVSLESAAESLARVVRAIETQNVVSNQLTELKGLLLTSREDILRIGAEREQIGRELRLMSRKIEGITCYAQEEGMELIK
Ga0335078_104509264	F017431	AGGAG	MVKPKSKSQQELDRTEILRYLNECGLQPVTPRSIMIYLDDCLRPVSLEGVEFHLRYMHDRHWVELGAEKKAGRPEVILWTRITADGVDEYDRRCAALGI