Scaffold Ga0335078_10009933

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10009933
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14095
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F004902	Metagenome / Metatranscriptome	419	Y
F007596	Metagenome	348	Y
F036872	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1000993312	F000208	GAGG	MRIRVTTRANLFEKRKEEHIERGYRIEDERPIPVNGFCSFIAVRELSVSDKLSDLVAEALNGNRAAREDW
Ga0335078_1000993313	F007596	GAGG	MSLKIRFRFGGRCARHPRYEPKRDGHPSDGKCEGCESLYVIHLYTKIAKRRAEDANLIVARMPTDRKEHKSNDERNSESGVES
Ga0335078_1000993316	F036872	AGAAGG	MKNAHLRFGWLTYVKSTEKTTTSIKLRLDRYIGEMLADPPRQAKAHLISVIGGDTQIAAVSAAISLGDRFMIEGPEIPPIRVCLERNAQCFKGSLQLAGRKKPLRHLIGMSEEFVLGRLLANSGKTLLGASDKQFVWASITHIYGIPGMPQWAEWFAGELAARRAVVKALGIGCDPVIVKGTKEDFLDWLSWGVESGAIHFPAESGSIRWPGLGLAEIFRQAD
Ga0335078_1000993319	F004902	GGAG	MKKPTLRVTKWLVDIPVEAQCTLCATVSFKAQRASHRPNREEYQKSLQAQFDAHSKAVHSES