Scaffold Ga0335078_10006766

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10006766
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16973
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046997	Metagenome	150	N
F058854	Metagenome	134	N
F063304	Metagenome	129	N
F080330	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_100067661	F080330	N/A	VKRFVHLVLLLLAAGTALAQDPFQGSNDAGQAGLADNVRLSTRIVENVYLMPAQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVAKADVDMHVAMDGKTYTFRLLVGREKVNYRKTYTAEGGGSSGHNLRKVPALAPTEINTTRLIHIINQCMRDPNYASVVAKDIGSSPQGATYLWDGVEVVLQSAWHYYPQDVVILQVEVHNPMSRALYLSATQIEPYIANTAFHYLLTQQGAKVLLPGQTDIKYIFLQGYGIDIEGARFELRLPATGKQLNAQPRQEQ
Ga0335078_1000676610	F046997	GGA	MTSAYPTLSLIGCSLTLSAVAAAGPLTAADVRAERDCIPRYLAQEKAEAIEMFAASQQALLRDRAMSGISRIENKLQSGPTNAVVEPTARLLPLGEKKLTLHVDVLKKTYTAYRPSNGKPLYLNTKGRRAPETYVAPEFLRVGVNILIPKGTARVPACLGGEELEDYLQLRCDRKLQTGDYWKELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCTELRTRTH
Ga0335078_1000676613	F063304	AGG	MEDMKLSNPAINGNSSPHVYNLLDQRLAQQGTPLHQIIRTYAAAVPAPPTSPEELLNQVTAVLGKWSADPAQCVKLKTPLAEAHLQLMDEISKIQGPEGAARLEATLVRVVANQFARNMGSELRIPDESKLICLSDVRPANAYSAFAQRTALIGIQPHEWVRHWVDSQRELFRAKAPTDAGYLRLAQRLSGPWPAEPGKGDAFQKTLATFLDGIASSTSHGQAVVVQSSLLDTFARAIRRDVRDLGLDRPTAPSPAMSIG
Ga0335078_100067669	F058854	GGA	MWLCVLCLFTSALNSEPELIDHFNARWQGCAWQANRLDLPGLAWQSALFPLITQGPGAFSLPSGAFVLRLCVLPLNPEDSEPILVLWGRIADPKAKPLARLFLRKRRLVWVCPIDPKGDSLFDAPRDVELETRELTPGLWATVDVLVNPSPYQQAFGWNLEMNHPQDPSKPMGKPLHLARQLTAADWSLQKIEVPRQHSVWLGQMELLAAGTPPAQLRPNILRR