Scaffold Ga0335078_10005381

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10005381
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18926
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y
F025325	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_100053815	F025325	GGAGG	MLGDGPKPLEKTWEELAAAASTETDPEKLAMVLEEIFAALAKRERSLSPPRNPSGLRLTE
Ga0335078_100053816	F005268	GAGG	VSRPEEETEEQQLWRVLSEAGLVEIRLDEFAERIRDVKGIVIARLRELLDFNSGIQERESAAYSLGALRGLELKVLANAPTTSDPSEP
Ga0335078_100053817	F003832	N/A	MKSTAQQLRTDANWPPEEGEFISFKSPAGTETTILREVRLGLLWRDFILEDGRVIPEHRVSGCPRPQVWRKIDEVSDRERQECEERLLSMAGAGMDPRERDQPFWAELNQYLAYTYLRFKQTGHKAQDTDQRQADWQ
Ga0335078_100053819	F014888	AGGAG	MSKVLEVLLTVVALAGLYSAIPASVPRHGSSVIRAEQAVVVADGSDPMPTCRGKRCIP