Scaffold Ga0335078_10001258

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10001258
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38445
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y
F015627	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1000125829	F015627	AGG	VHTYDEPALGWTVVLRRQPVRIVEGRPEGGYAEAYELICCDCGDDPDLDYRDVSPDFQQIRGPYVFSAGIAAYGQHIRLQHGQQPIPAASQTRRRTGHADGKTR
Ga0335078_100012585	F008041	GGAG	MPDRLFQSEEFGTSAQAAATIIFICPYSAPIQKVRFAIRRLLSAGYHVVAYQTTTAVFTQADPMILPELISQIRDDVRSRIAKRAAEGVTEFGFFGSSLGSFILYNCVGRGIPELRWGVFNTGGNIARGLWNMPALRQLHAARGWSLPRLEEAWAELQWPDFGRLDGCRFVFASSRRDRIAPLPDISRYLEPMLRAGADVSVYELLAISHRTTVIAGLWKAPHLVRMVRVSPACLTR