NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000323

Scaffold Ga0335078_10000323


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000323 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76622
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F000872Metagenome / Metatranscriptome851Y
F001471Metagenome / Metatranscriptome688Y
F008793Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000032337F001471AGGAGGMKTKARDVGMALMLLAVALPAFAKTYKSQYPVACGELWNAVKDTLANPDNNYDVKASDDTSMHADYDVKHAAHVTVTGVFLQRQNHVTLVPKGDAACEMQVISNFSGWEHTDRGDFKKRVDESLVKLKSVPPATPPVQPAVPAIPQK
Ga0335078_1000032342F000530N/AMVEQSHSTASEAPAEEVKRDNRPFRVKLRGSVLVLLRLPNRRDVRAAIHQLSVTGGVIHLEKPLDEKLEVQMIFHIGGATIRSRAQMLFPMWATQGWMQPFRFVDLSDGDRGSLDEHLKSFLGDAAKSTAAGA
Ga0335078_1000032359F000872GGAGGVSKTAAAVLAFVCLTMFSIPMSAQLLANGNAYAGVSYGHFTDTVVKQSYKGWNGSVEDLPFARFPHLGIVLDGSGYYRTGVTIYNVVLGPRLSINYGKWRPFVHAMGGLRRINSNGFIDNPVALDAGAGADYKLPFKNFSWRLQGDYMRTHYLSASQNDFRVSTGIVWRF
Ga0335078_1000032368F008793N/AMLQKNSNSRFPNSHLPECWLHCLVCPRRYRANLPSRLRPSLFASD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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