Scaffold Ga0335078_10000165

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000165
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111721
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (78.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000072	Metagenome / Metatranscriptome	2651	Y
F005865	Metagenome	388	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_1000016528	F000036	N/A	MAYKETFWMACDSTEQLRAEYGPFHTRTEAEIEARKLGFGYLLRYEHLLAANEEIEEVRCIFVELPGSTPIGIDCSSVSLHTRCATCGESAVHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEICGWRG
Ga0335078_100001656	F005865	GAGG	MPAPEPGPEWVLSGANSRLDPATESELSKAARSAWPKALAHVRQVQARDPFDDDGILVAEVWESVLQSVSGTLNRMNGRRGEIGDLEAYLLGSFYHRLGRALKKEERREETIHLVSSAQELELLDKTSRGVQDDIEGKVHAREILDRMDEWSRKVWIAREYGYTWKQIGDVLGTPGDSVMLRFRRRMKILRERLFGGR
Ga0335078_1000016592	F000072	GAGG	MDAEQTISEIEWLERIFAVPDIRPLSASDVSAANRKHDERLAHSPWFQLWQRYGVCCR