NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000124

Scaffold Ga0335078_10000124


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000124 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131876
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)100 (79.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y
F040900Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000012467F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVAESVRRWWALIHPADRPIAQKYLLMVLGRSNSALDAMGAELLSVSGCEIAPALVEPSLPSQRMRLVQRLMKETSVRTAV
Ga0335078_1000012468F001318GGAGGMKAWVWTLAVPVLISLAQAQTSSSLNLQGTPSQEASSQDSWHPADPPDERMFFPRDMFWGWAQFDLAPPHNEIDPNLCAGNAGHYGGANAPCSMFARYMLSGILEVRPFGRGPLRRFMVYGAPTFLFGKNVPQFLYTWSPDAIGIEHSWGVGIYLNKGFEFRVTQHFLFDRLGARNTSLGVADLGNNGPWGRYMSLGVRKTFGMRRW
Ga0335078_1000012471F040900N/AMVAPNPAWGDALKLLLLIVFGGGLLTLGRWSSRLGGARRRDAFSDVPTPDVADLLPGSAPKLWPPSAEEVAASLPFDPALGNIRIKKFFFEKMDAIPGPADREVFADELHVELYDPDTDHSWWQSYFVATPQGFAKILHDKAWRYLHAPAVLVFPRYDLEEIRRAVVSRILADHDFFKDKEQAEESL
Ga0335078_1000012485F000426AGGGGGMKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAESDEEDNVVLAEVDEAIGQEDSMAAKAGAGSANAAASKASRPTAPRWP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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